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-rw-r--r--analysis/year.R20
-rw-r--r--src/Makefile.am39
-rw-r--r--src/aggregator.c6
-rw-r--r--src/assign/assign_protein_type.c (renamed from src/assign_protein_type.c)87
-rw-r--r--src/assign/assign_protein_type.h (renamed from src/assign_protein_type.h)0
-rw-r--r--src/error/check_error.c (renamed from src/check_error.c)0
-rw-r--r--src/error/check_error.h (renamed from src/check_error.h)0
-rw-r--r--src/error/check_h5_error.c (renamed from src/check_h5_error.c)0
-rw-r--r--src/error/check_h5_error.h (renamed from src/check_h5_error.h)0
-rw-r--r--src/error/check_ncbi_error.c (renamed from src/check_ncbi_error.c)0
-rw-r--r--src/error/check_ncbi_error.h (renamed from src/check_ncbi_error.h)0
-rw-r--r--src/load/load_influenza_aa_dat.c (renamed from src/load_influenza_aa_dat.c)4
-rw-r--r--src/load/load_influenza_aa_dat.h (renamed from src/load_influenza_aa_dat.h)0
-rw-r--r--src/load/load_influenza_faa.c (renamed from src/load_influenza_faa.c)10
-rw-r--r--src/load/load_influenza_faa.h (renamed from src/load_influenza_faa.h)0
-rw-r--r--src/model/gi_type_data.h21
-rw-r--r--src/model/gi_type_data_init.c36
-rw-r--r--src/model/gi_type_data_init.h14
-rw-r--r--src/model/sequence_data.h (renamed from src/sequence_data.h)5
-rw-r--r--src/model/sequence_data_init.c (renamed from src/sequence_data_init.c)6
-rw-r--r--src/model/sequence_data_init.h (renamed from src/sequence_data_init.h)0
-rw-r--r--src/updator.c4
22 files changed, 181 insertions, 71 deletions
diff --git a/src/model/sequence_data_init.c b/src/model/sequence_data_init.c
new file mode 100644
index 0000000..f6b3b1f
--- a/dev/null
+++ b/src/model/sequence_data_init.c
@@ -0,0 +1,31 @@
+#include "sequence_data_init.h"
+#include "sequence_data.h"
+
+void
+sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes,
+ hid_t *field_type)
+{
+ *dst_size = sizeof (sequence_data);
+
+ dst_offset[0] = HOFFSET (sequence_data, gi);
+ dst_offset[1] = HOFFSET (sequence_data, gb);
+ dst_offset[2] = HOFFSET (sequence_data, description);
+
+ sequence_data dst_buf[1];
+
+ dst_sizes[0] = sizeof (dst_buf[0].gi);
+ dst_sizes[1] = sizeof (dst_buf[0].gb);
+ dst_sizes[2] = sizeof (dst_buf[0].description);
+
+ field_type[0] = H5T_NATIVE_INT;
+
+ hid_t gb_type = H5Tcopy (H5T_C_S1);
+ H5Tset_size (gb_type, 9);
+ field_type[1] = gb_type;
+
+ hid_t description_type = H5Tcopy (H5T_C_S1);
+ H5Tset_size (description_type, 196);
+ field_type[2] = description_type;
+
+ return;
+}

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