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-rw-r--r--analysis/year.R20
-rw-r--r--src/Makefile.am39
-rw-r--r--src/aggregator.c6
-rw-r--r--src/assign/assign_protein_type.c (renamed from src/assign_protein_type.c)87
-rw-r--r--src/assign/assign_protein_type.h (renamed from src/assign_protein_type.h)0
-rw-r--r--src/error/check_error.c (renamed from src/check_error.c)0
-rw-r--r--src/error/check_error.h (renamed from src/check_error.h)0
-rw-r--r--src/error/check_h5_error.c (renamed from src/check_h5_error.c)0
-rw-r--r--src/error/check_h5_error.h (renamed from src/check_h5_error.h)0
-rw-r--r--src/error/check_ncbi_error.c (renamed from src/check_ncbi_error.c)0
-rw-r--r--src/error/check_ncbi_error.h (renamed from src/check_ncbi_error.h)0
-rw-r--r--src/load/load_influenza_aa_dat.c (renamed from src/load_influenza_aa_dat.c)4
-rw-r--r--src/load/load_influenza_aa_dat.h (renamed from src/load_influenza_aa_dat.h)0
-rw-r--r--src/load/load_influenza_faa.c (renamed from src/load_influenza_faa.c)10
-rw-r--r--src/load/load_influenza_faa.h (renamed from src/load_influenza_faa.h)0
-rw-r--r--src/model/gi_type_data.h21
-rw-r--r--src/model/gi_type_data_init.c36
-rw-r--r--src/model/gi_type_data_init.h14
-rw-r--r--src/model/sequence_data.h (renamed from src/sequence_data.h)5
-rw-r--r--src/model/sequence_data_init.c (renamed from src/sequence_data_init.c)6
-rw-r--r--src/model/sequence_data_init.h (renamed from src/sequence_data_init.h)0
-rw-r--r--src/updator.c4
22 files changed, 181 insertions, 71 deletions
diff --git a/src/model/gi_type_data_init.h b/src/model/gi_type_data_init.h
new file mode 100644
index 0000000..5c45cba
--- a/dev/null
+++ b/src/model/gi_type_data_init.h
@@ -0,0 +1,14 @@
+#ifndef GI_TYPE_DATA_INIT_H
+#define GI_TYPE_DATA_INIT_H
+
+#include <hdf5.h>
+
+/*
+ * Initialize the structures describing the struct. These descriptive
+ * structures are used by the HDF5 API.
+ */
+void
+gi_type_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes,
+ hid_t *field_type);
+
+#endif // GI_TYPE_DATA_INIT_H

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