| -rw-r--r-- | configure.ac | 20 | ||||
| -rw-r--r-- | src/Makefile.am | 6 | ||||
| -rw-r--r-- | src/aggregator.c | 14 | ||||
| -rw-r--r-- | src/assign_protein_type.c | 72 | ||||
| -rw-r--r-- | src/assign_protein_type.h | 6 | ||||
| -rw-r--r-- | src/check_error.c | 14 | ||||
| -rw-r--r-- | src/check_error.h | 11 | ||||
| -rw-r--r-- | src/check_h5_error.c | 12 | ||||
| -rw-r--r-- | src/check_h5_error.h | 12 | ||||
| -rw-r--r-- | src/check_ncbi_error.c | 13 | ||||
| -rw-r--r-- | src/check_ncbi_error.h | 13 | ||||
| -rw-r--r-- | src/load_influenza_aa_dat.c | 31 |
12 files changed, 211 insertions, 13 deletions
diff --git a/src/assign_protein_type.h b/src/assign_protein_type.h index 312b774..1dfb8e6 100644 --- a/src/assign_protein_type.h +++ b/src/assign_protein_type.h @@ -4,7 +4,11 @@ #include <hdf5.h> /* - * Determine the protein type for each protein sequence record. + * Determine the protein type for each protein sequence record. The + * technique used by NCBI is used here. A BLAST database of + * prototypical protein sequences serves as the reference. Each input + * sequence is BLASTed against this database. The first hit is used + * to assign a protein type to sequence. */ void assign_protein_type (hid_t file_id); |
