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-rw-r--r--configure.ac62
-rw-r--r--doc/build-cobalt.txt24
-rw-r--r--src/Makefile.am6
-rw-r--r--src/assign/assign_blast_scores.c27
-rw-r--r--src/assign/assign_blast_scores.h12
-rw-r--r--src/updator.c20
6 files changed, 127 insertions, 24 deletions
diff --git a/src/assign/assign_blast_scores.h b/src/assign/assign_blast_scores.h
new file mode 100644
index 0000000..2c52192
--- a/dev/null
+++ b/src/assign/assign_blast_scores.h
@@ -0,0 +1,12 @@
+#ifndef ASSIGN_BLAST_SCORES_H
+#define ASSIGN_BLAST_SCORES_H
+
+#include <hdf5.h>
+
+/*
+ * Pairwise BLAST of each protein in the NCBI Influenza Sequence
+ * Database against the full database.
+ */
+void assign_blast_scores (hid_t file_id);
+
+#endif // ASSIGN_BLAST_SCORES_H

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