| -rw-r--r-- | configure.ac | 62 | ||||
| -rw-r--r-- | doc/build-cobalt.txt | 24 | ||||
| -rw-r--r-- | src/Makefile.am | 6 | ||||
| -rw-r--r-- | src/assign/assign_blast_scores.c | 27 | ||||
| -rw-r--r-- | src/assign/assign_blast_scores.h | 12 | ||||
| -rw-r--r-- | src/updator.c | 20 |
6 files changed, 127 insertions, 24 deletions
diff --git a/doc/build-cobalt.txt b/doc/build-cobalt.txt index 91b356b..76612a4 100644 --- a/doc/build-cobalt.txt +++ b/doc/build-cobalt.txt @@ -19,6 +19,24 @@ Building on NCSA Cobalt. +phdf5-1.8.4 -- Configure -export CPPFLAGS="-I$HDF5_HOME/include -I$NCBI_DIR/include" -export LDFLAGS="-L/usr/apps/hdf/szip/lib -L$HDF5_HOME/lib -L$NCBI_DIR/lib -L/usr/local/intel/10.1.017/lib" -export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/apps/hdf/szip/lib +export PETSC_DIR=/u/ac/dpellegr/apps/Installers/petsc-3.0.0-p10 + +export CPPFLAGS="\ +-I$HDF5_HOME/include \ +-I$NCBI_DIR/include \ +-I$PETSC_DIR/include \ +-I$PETSC_DIR/linux-gnu-c-debug/include" + +export LDFLAGS="\ +-L$HDF5_HOME/lib \ +-L/usr/apps/hdf/szip/lib \ +-L/usr/local/intel/10.1.017/lib \ +-L$NCBI_DIR/lib \ +-L$PETSC_DIR/linux-gnu-c-debug/lib" + +export LD_LIBRARY_PATH=\ +$LD_LIBRARY_PATH:\ +/usr/apps/hdf/szip/lib:\ +$PETSC_DIR/linux-gnu-c-debug/lib + + |
