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-rw-r--r--src/aggregator.c10
-rw-r--r--src/assign/assign_protein_type.c24
-rw-r--r--src/error/check_h5_error.c2
-rw-r--r--src/error/check_h5_error.h2
-rw-r--r--src/load/load_influenza_aa_dat.c12
-rw-r--r--src/load/load_influenza_faa.c12
-rw-r--r--src/updator.c4
7 files changed, 35 insertions, 31 deletions
diff --git a/src/load/load_influenza_aa_dat.c b/src/load/load_influenza_aa_dat.c
index b50fcab..bbd4f8b 100644
--- a/src/load/load_influenza_aa_dat.c
+++ b/src/load/load_influenza_aa_dat.c
@@ -5,12 +5,14 @@
* todo: Handle NULL values occuring in numeric fields.
*/
+#define _GNU_SOURCE
#include "load_influenza_aa_dat.h"
#include "error/check_error.h"
#include "error/check_h5_error.h"
#include <hdf5_hl.h>
#include <string.h>
#include <stdlib.h>
+#include <stdio.h>
#define NFIELDS (hsize_t) 11
@@ -223,18 +225,18 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
herr_t status = H5TBget_table_info (file_id, "influenza_aa.dat",
&nfields, &nrecords);
if (status < 0)
- check_h5_error (status, __FILE__, __LINE__);
+ check_h5_error (__FILE__, __LINE__);
status =
H5TBdelete_record (file_id, "influenza_aa.dat", 0, nrecords);
if (status < 0)
- check_h5_error (status, __FILE__, __LINE__);
+ check_h5_error (__FILE__, __LINE__);
status =
H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,
dst_offset, dst_sizes, &p_data);
if (status < 0)
- check_h5_error (status, __FILE__, __LINE__);
+ check_h5_error (__FILE__, __LINE__);
}
/*
@@ -250,7 +252,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
chunk_size, fill_data, compress,
&p_data);
if (status < 0)
- check_h5_error (status, __FILE__, __LINE__);
+ check_h5_error (__FILE__, __LINE__);
}
}
@@ -260,7 +262,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,
dst_offset, dst_sizes, &p_data);
if (status < 0)
- check_h5_error (status, __FILE__, __LINE__);
+ check_h5_error (__FILE__, __LINE__);
}
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