exp007 - Influenza Data Processing

Age	Commit message (Collapse)	Author	Files	Lines
2010-03-05	Modified to take the location of the exp004 directory from an	Don Pellegrino	4	-14/+60
	environment variable.
2010-01-24	Commented out loading the BLAST file as thing shouldn't have to be done again...	Don Pellegrino	1	-4/+2

2010-01-23	Modified to test loading BLAST scores.	Don Pellegrino	1	-0/+13

2010-01-21	Removed unused status variable from check_h5_error function.	Donald Pellegrino	7	-31/+35

2010-01-19	Ran GNU indent on the code and headers.	Don Pellegrino	10	-93/+99

2010-01-19	Program now fully uses an existing file. The load functions detect	Don Pellegrino	7	-86/+201
	their existing target tables and purge them if they exist or create them if they don't. The assign function will reuse existing type values by gi and write a new table that is aligned by gi with influenza.faa.
2010-01-18	Organzied the functions into assign, error, load and model subdirectories. C...	Don Pellegrino	22	-71/+181

2010-01-18	Moved updating the HDF5 file to a separate driver.	Don Pellegrino	3	-8/+43

2010-01-18	Added loading of the influenza.faa file.	Don Pellegrino	4	-8/+126

2010-01-18	Ran GNU indent to format the code as per GNU coding conventions.	Don Pellegrino	13	-148/+145

2010-01-17	Added error checking routines. Added implementation of	Don Pellegrino	12	-13/+211
	assign_protein_type tested against a single hard-coded sequence input. The next step is to iterate over all records in the HDF5 collection that don't have a type assigned and to assign a type value.
2010-01-16	Added function declaration for load_influenza_faa.	Don Pellegrino	4	-3/+31

2010-01-16	Implemented the loading of the influenza_aa.dat file. Tested by	Don Pellegrino	4	-41/+145
	comparing an export of the data from the HDF5 file and the original file.
2010-01-15	Code compiles and creates an HDF5 file containing a table with one	Don Pellegrino	5	-0/+208
	record of influenza_aa.dat populated.