summaryrefslogtreecommitdiffstats
Side-by-side diff
-rw-r--r--.gitignore5
-rw-r--r--src/Makefile.am10
-rw-r--r--src/assign_protein_type.c135
-rw-r--r--src/load_influenza_faa.c67
-rw-r--r--src/sequence_data.h16
-rw-r--r--src/sequence_data_init.c37
-rw-r--r--src/sequence_data_init.h14
7 files changed, 188 insertions, 96 deletions
diff --git a/src/sequence_data_init.c b/src/sequence_data_init.c
new file mode 100644
index 0000000..09ba189
--- a/dev/null
+++ b/src/sequence_data_init.c
@@ -0,0 +1,37 @@
+#include "sequence_data_init.h"
+#include "sequence_data.h"
+
+void
+sequence_data_init (size_t *dst_size, size_t *dst_offset, size_t *dst_sizes,
+ hid_t *field_type)
+{
+ *dst_size = sizeof (sequence_data);
+
+ dst_offset[0] = HOFFSET (sequence_data, gi);
+ dst_offset[1] = HOFFSET (sequence_data, gb);
+ dst_offset[2] = HOFFSET (sequence_data, description);
+ dst_offset[3] = HOFFSET (sequence_data, protein_type);
+
+ sequence_data dst_buf[1];
+
+ dst_sizes[0] = sizeof (dst_buf[0].gi);
+ dst_sizes[1] = sizeof (dst_buf[0].gb);
+ dst_sizes[2] = sizeof (dst_buf[0].description);
+ dst_sizes[3] = sizeof (dst_buf[0].protein_type);
+
+ field_type[0] = H5T_NATIVE_INT;
+
+ hid_t gb_type = H5Tcopy (H5T_C_S1);
+ H5Tset_size (gb_type, 9);
+ field_type[1] = gb_type;
+
+ hid_t description_type = H5Tcopy (H5T_C_S1);
+ H5Tset_size (description_type, 196);
+ field_type[2] = description_type;
+
+ hid_t protein_type_type = H5Tcopy (H5T_C_S1);
+ H5Tset_size (protein_type_type, 7);
+ field_type[3] = protein_type_type;
+
+ return;
+}

Valid XHTML 1.0 Strict

Copyright © 2009 Don Pellegrino All Rights Reserved.