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-rw-r--r--src/aggregator.c10
-rw-r--r--src/assign/assign_protein_type.c24
-rw-r--r--src/error/check_h5_error.c2
-rw-r--r--src/error/check_h5_error.h2
-rw-r--r--src/load/load_influenza_aa_dat.c12
-rw-r--r--src/load/load_influenza_faa.c12
-rw-r--r--src/updator.c4
7 files changed, 35 insertions, 31 deletions
diff --git a/src/load/load_influenza_aa_dat.c b/src/load/load_influenza_aa_dat.c
index b50fcab..bbd4f8b 100644
--- a/src/load/load_influenza_aa_dat.c
+++ b/src/load/load_influenza_aa_dat.c
@@ -5,12 +5,14 @@
5 * todo: Handle NULL values occuring in numeric fields.5 * todo: Handle NULL values occuring in numeric fields.
6 */6 */
77
8#define _GNU_SOURCE
8#include "load_influenza_aa_dat.h"9#include "load_influenza_aa_dat.h"
9#include "error/check_error.h"10#include "error/check_error.h"
10#include "error/check_h5_error.h"11#include "error/check_h5_error.h"
11#include <hdf5_hl.h>12#include <hdf5_hl.h>
12#include <string.h>13#include <string.h>
13#include <stdlib.h>14#include <stdlib.h>
15#include <stdio.h>
1416
15#define NFIELDS (hsize_t) 1117#define NFIELDS (hsize_t) 11
1618
@@ -223,18 +225,18 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
223 herr_t status = H5TBget_table_info (file_id, "influenza_aa.dat",225 herr_t status = H5TBget_table_info (file_id, "influenza_aa.dat",
224 &nfields, &nrecords);226 &nfields, &nrecords);
225 if (status < 0)227 if (status < 0)
226 check_h5_error (status, __FILE__, __LINE__);228 check_h5_error (__FILE__, __LINE__);
227229
228 status =230 status =
229 H5TBdelete_record (file_id, "influenza_aa.dat", 0, nrecords);231 H5TBdelete_record (file_id, "influenza_aa.dat", 0, nrecords);
230 if (status < 0)232 if (status < 0)
231 check_h5_error (status, __FILE__, __LINE__);233 check_h5_error (__FILE__, __LINE__);
232234
233 status =235 status =
234 H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,236 H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,
235 dst_offset, dst_sizes, &p_data);237 dst_offset, dst_sizes, &p_data);
236 if (status < 0)238 if (status < 0)
237 check_h5_error (status, __FILE__, __LINE__);239 check_h5_error (__FILE__, __LINE__);
238 }240 }
239241
240 /*242 /*
@@ -250,7 +252,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
250 chunk_size, fill_data, compress,252 chunk_size, fill_data, compress,
251 &p_data);253 &p_data);
252 if (status < 0)254 if (status < 0)
253 check_h5_error (status, __FILE__, __LINE__);255 check_h5_error (__FILE__, __LINE__);
254 }256 }
255 }257 }
256258
@@ -260,7 +262,7 @@ load_influenza_aa_dat (hid_t file_id, const char *file_name)
260 H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,262 H5TBappend_records (file_id, "influenza_aa.dat", 1, dst_size,
261 dst_offset, dst_sizes, &p_data);263 dst_offset, dst_sizes, &p_data);
262 if (status < 0)264 if (status < 0)
263 check_h5_error (status, __FILE__, __LINE__);265 check_h5_error (__FILE__, __LINE__);
264 }266 }
265267
266 if (running)268 if (running)

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