| -rw-r--r-- | src/aggregator.c | 2 | ||||
| -rw-r--r-- | src/assign_protein_type.c | 7 | ||||
| -rw-r--r-- | src/assign_protein_type.h | 3 | ||||
| -rw-r--r-- | src/check_error.c | 2 | ||||
| -rw-r--r-- | src/check_error.h | 3 | ||||
| -rw-r--r-- | src/check_h5_error.c | 2 | ||||
| -rw-r--r-- | src/check_h5_error.h | 2 | ||||
| -rw-r--r-- | src/check_ncbi_error.c | 3 | ||||
| -rw-r--r-- | src/check_ncbi_error.h | 2 | ||||
| -rw-r--r-- | src/load_influenza_aa_dat.c | 259 | ||||
| -rw-r--r-- | src/load_influenza_aa_dat.h | 3 | ||||
| -rw-r--r-- | src/load_influenza_faa.c | 2 | ||||
| -rw-r--r-- | src/load_influenza_faa.h | 3 |
13 files changed, 145 insertions, 148 deletions
diff --git a/src/assign_protein_type.c b/src/assign_protein_type.c index 643ea3f..54db84e 100644 --- a/src/assign_protein_type.c +++ b/src/assign_protein_type.c @@ -48,8 +48,8 @@ assign_protein_type (hid_t file_id) * Read the sequence from the database by GI. */ Int4 sequence_number = readdb_gi2seq (seqdb, 453644, NULL); - BioseqPtr bsp = readdb_get_bioseq(seqdb, sequence_number); - + BioseqPtr bsp = readdb_get_bioseq (seqdb, sequence_number); + SeqAlignPtr seqalign = BioseqBlastEngine (bsp, "blastp", REFDB, @@ -66,8 +66,7 @@ assign_protein_type (hid_t file_id) Char target_id_buf[BUFFER_LEN + 1]; SeqIdPtr target_id = SeqAlignId (seqalign, 1); SeqIdWrite (target_id, target_id_buf, PRINTID_FASTA_SHORT, BUFFER_LEN); - printf ("%s\n", - target_id_buf); + printf ("%s\n", target_id_buf); } // Clean up memory for the next ieration. |
