| -rw-r--r-- | configure.ac | 62 | ||||
| -rw-r--r-- | doc/build-cobalt.txt | 24 | ||||
| -rw-r--r-- | src/Makefile.am | 6 | ||||
| -rw-r--r-- | src/assign/assign_blast_scores.c | 27 | ||||
| -rw-r--r-- | src/assign/assign_blast_scores.h | 12 | ||||
| -rw-r--r-- | src/updator.c | 20 |
6 files changed, 127 insertions, 24 deletions
diff --git a/doc/build-cobalt.txt b/doc/build-cobalt.txt index 91b356b..76612a4 100644 --- a/doc/build-cobalt.txt +++ b/doc/build-cobalt.txt | |||
| @@ -19,6 +19,24 @@ Building on NCSA Cobalt. | |||
| 19 | +phdf5-1.8.4 | 19 | +phdf5-1.8.4 |
| 20 | 20 | ||
| 21 | -- Configure | 21 | -- Configure |
| 22 | export CPPFLAGS="-I$HDF5_HOME/include -I$NCBI_DIR/include" | 22 | export PETSC_DIR=/u/ac/dpellegr/apps/Installers/petsc-3.0.0-p10 |
| 23 | export LDFLAGS="-L/usr/apps/hdf/szip/lib -L$HDF5_HOME/lib -L$NCBI_DIR/lib -L/usr/local/intel/10.1.017/lib" | 23 | |
| 24 | export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/apps/hdf/szip/lib | 24 | export CPPFLAGS="\ |
| 25 | -I$HDF5_HOME/include \ | ||
| 26 | -I$NCBI_DIR/include \ | ||
| 27 | -I$PETSC_DIR/include \ | ||
| 28 | -I$PETSC_DIR/linux-gnu-c-debug/include" | ||
| 29 | |||
| 30 | export LDFLAGS="\ | ||
| 31 | -L$HDF5_HOME/lib \ | ||
| 32 | -L/usr/apps/hdf/szip/lib \ | ||
| 33 | -L/usr/local/intel/10.1.017/lib \ | ||
| 34 | -L$NCBI_DIR/lib \ | ||
| 35 | -L$PETSC_DIR/linux-gnu-c-debug/lib" | ||
| 36 | |||
| 37 | export LD_LIBRARY_PATH=\ | ||
| 38 | $LD_LIBRARY_PATH:\ | ||
| 39 | /usr/apps/hdf/szip/lib:\ | ||
| 40 | $PETSC_DIR/linux-gnu-c-debug/lib | ||
| 41 | |||
| 42 | |||
