author | Don Pellegrino <don@drexel.edu> | 2010-03-28 08:13:11 (GMT) |
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committer | Don Pellegrino <don@drexel.edu> | 2010-03-28 08:13:11 (GMT) |
commit | 1d29fba5de1dd0731564829dbf5aec572d161bd5 (patch) (unidiff) | |
tree | ef12da10645b586934986fbbcb63111f1a835e35 | |
parent | 9e349d880ba01b369cd82e9a9b47057c26b123e8 (diff) | |
download | exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.zip exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.tar.gz exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.tar.bz2 |
Testing the meta-data/feature/Entrez load.
-rw-r--r-- | src/aggregator.c | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/src/aggregator.c b/src/aggregator.c index 8057bb3..c958311 100644 --- a/src/aggregator.c +++ b/src/aggregator.c | |||
@@ -4,7 +4,9 @@ | |||
4 | */ | 4 | */ |
5 | 5 | ||
6 | #include "error/check_h5_error.h" | 6 | #include "error/check_h5_error.h" |
7 | #include "load/load_asn.h" | ||
7 | #include "load/load_blast_scores.h" | 8 | #include "load/load_blast_scores.h" |
9 | #include "load/load_features.h" | ||
8 | #include "load/load_influenza_aa_dat.h" | 10 | #include "load/load_influenza_aa_dat.h" |
9 | #include "load/load_influenza_faa.h" | 11 | #include "load/load_influenza_faa.h" |
10 | #include <stdio.h> | 12 | #include <stdio.h> |
@@ -23,7 +25,7 @@ main () | |||
23 | if (exp004 == NULL) | 25 | if (exp004 == NULL) |
24 | { | 26 | { |
25 | printf ("EXP004 environment variable not set. This should be set to the " | 27 | printf ("EXP004 environment variable not set. This should be set to the " |
26 | "directory containing the genomes/INFLUENZA data."); | 28 | "directory containing the genomes/INFLUENZA data.\n"); |
27 | exit (0); | 29 | exit (0); |
28 | } | 30 | } |
29 | 31 | ||
@@ -50,6 +52,7 @@ main () | |||
50 | /* | 52 | /* |
51 | * Load the supplementary protein data file. | 53 | * Load the supplementary protein data file. |
52 | */ | 54 | */ |
55 | /* | ||
53 | char* loc1 = malloc (strlen (exp004) + strlen (INFLUENZA_AA_DAT) + 1); | 56 | char* loc1 = malloc (strlen (exp004) + strlen (INFLUENZA_AA_DAT) + 1); |
54 | loc1[0] = '\0'; | 57 | loc1[0] = '\0'; |
55 | strcat (loc1, exp004); | 58 | strcat (loc1, exp004); |
@@ -58,10 +61,12 @@ main () | |||
58 | loc1); | 61 | loc1); |
59 | load_influenza_aa_dat (file_id, loc1); | 62 | load_influenza_aa_dat (file_id, loc1); |
60 | free (loc1); | 63 | free (loc1); |
64 | */ | ||
61 | 65 | ||
62 | /* | 66 | /* |
63 | * Load the FASTA protein sequence data file. | 67 | * Load the FASTA protein sequence data file. |
64 | */ | 68 | */ |
69 | /* | ||
65 | char* loc2 = malloc (strlen (exp004) + strlen (INFLUENZA_FAA) + 1); | 70 | char* loc2 = malloc (strlen (exp004) + strlen (INFLUENZA_FAA) + 1); |
66 | loc2[0] = '\0'; | 71 | loc2[0] = '\0'; |
67 | strcat (loc2, exp004); | 72 | strcat (loc2, exp004); |
@@ -70,6 +75,13 @@ main () | |||
70 | loc2); | 75 | loc2); |
71 | load_influenza_faa (file_id, loc2); | 76 | load_influenza_faa (file_id, loc2); |
72 | free (loc2); | 77 | free (loc2); |
78 | */ | ||
79 | |||
80 | /* | ||
81 | * Load the Entrez features. | ||
82 | */ | ||
83 | // load_features (file_id, "efetch-protein-0.xml"); | ||
84 | load_asn (file_id, "453644.asn"); | ||
73 | 85 | ||
74 | /* | 86 | /* |
75 | * Load the BLAST scores. | 87 | * Load the BLAST scores. |