author | Don Pellegrino <don@drexel.edu> | 2010-03-28 08:13:11 (GMT) |
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committer | Don Pellegrino <don@drexel.edu> | 2010-03-28 08:13:11 (GMT) |
commit | 1d29fba5de1dd0731564829dbf5aec572d161bd5 (patch) (side-by-side diff) | |
tree | ef12da10645b586934986fbbcb63111f1a835e35 | |
parent | 9e349d880ba01b369cd82e9a9b47057c26b123e8 (diff) | |
download | exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.zip exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.tar.gz exp007-1d29fba5de1dd0731564829dbf5aec572d161bd5.tar.bz2 |
Testing the meta-data/feature/Entrez load.
-rw-r--r-- | src/aggregator.c | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/src/aggregator.c b/src/aggregator.c index 8057bb3..c958311 100644 --- a/src/aggregator.c +++ b/src/aggregator.c @@ -4,7 +4,9 @@ */ #include "error/check_h5_error.h" +#include "load/load_asn.h" #include "load/load_blast_scores.h" +#include "load/load_features.h" #include "load/load_influenza_aa_dat.h" #include "load/load_influenza_faa.h" #include <stdio.h> @@ -23,7 +25,7 @@ main () if (exp004 == NULL) { printf ("EXP004 environment variable not set. This should be set to the " - "directory containing the genomes/INFLUENZA data."); + "directory containing the genomes/INFLUENZA data.\n"); exit (0); } @@ -50,6 +52,7 @@ main () /* * Load the supplementary protein data file. */ + /* char* loc1 = malloc (strlen (exp004) + strlen (INFLUENZA_AA_DAT) + 1); loc1[0] = '\0'; strcat (loc1, exp004); @@ -58,10 +61,12 @@ main () loc1); load_influenza_aa_dat (file_id, loc1); free (loc1); + */ /* * Load the FASTA protein sequence data file. */ + /* char* loc2 = malloc (strlen (exp004) + strlen (INFLUENZA_FAA) + 1); loc2[0] = '\0'; strcat (loc2, exp004); @@ -70,6 +75,13 @@ main () loc2); load_influenza_faa (file_id, loc2); free (loc2); + */ + + /* + * Load the Entrez features. + */ + // load_features (file_id, "efetch-protein-0.xml"); + load_asn (file_id, "453644.asn"); /* * Load the BLAST scores. |