AC_INIT([exp007], [0.1], [don@drexel.edu]) AM_INIT_AUTOMAKE([-Wall, -Werror, -Wno-portability]) AC_PROG_CC AM_CONFIG_HEADER([config.h]) AC_CONFIG_FILES([ Makefile src/Makefile ]) # Headers Checks AC_CHECK_HEADERS([hdf5.h],[], [AC_MSG_ERROR("The HDF5 headers are needed to build the system.")]) AC_CHECK_HEADERS([petscconf.h],[], [AC_MSG_ERROR("The PETSc headers are needed to build the system.")]) AC_CHECK_HEADERS([petscmat.h],[], [AC_MSG_ERROR("The PETSc headers are needed to build the system.")]) ######################## # MODULE: NCBI Toolkit # ######################## # Check for the NCBI ToolBox libraries. AC_SEARCH_LIBS([log10],[m],[], [AC_MSG_ERROR("The C Math Library is needed to build the system.")]) AC_SEARCH_LIBS([NlmThreadsAvailable],[ncbi],[], [AC_MSG_ERROR("The NCBI ToolBox is needed to build the system. Information on this API can be found on-line at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/index.cgi. Debian users can add the package libncbi6-dev to fulfill this dependency.")]) AC_SEARCH_LIBS([SeqAlignNew],[ncbiobj],[], [AC_MSG_ERROR("The NCBI ToolBox is needed to build the system. Information on this API can be found on-line at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/index.cgi. Debian users can add the package libncbi6-dev to fulfill this dependency.")]) AC_SEARCH_LIBS([Blast_RedoOneMatch],[blastcompadj],[], [AC_MSG_ERROR("The NCBI ToolBox is needed to build the system. Information on this API can be found on-line at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/index.cgi. Debian users can add the package libncbi6-dev to fulfill this dependency.")]) AC_SEARCH_LIBS([BioseqBlastEngine],[ncbitool],[], [AC_MSG_ERROR("The NCBI ToolBox is needed to build the system. Information on this API can be found on-line at http://www.ncbi.nlm.nih.gov/IEB/ToolBox/index.cgi. Debian users can add the package libncbi6-dev to fulfill this dependency.")]) ################ # MODULE: HDF5 # ################ AC_SEARCH_LIBS([__intel_rtc_uninit_use],[irc]) AC_SEARCH_LIBS([MPI_File_open],[mpi]) AC_SEARCH_LIBS([compress2],[z]) AC_SEARCH_LIBS([SZ_BufftoBuffCompress],[sz]) AC_SEARCH_LIBS([H5Fcreate],[hdf5],[], [AC_MSG_ERROR("The HDF5 libraries are needed to build the system.")]) AC_SEARCH_LIBS([H5TBmake_table],[hdf5_hl],[], [AC_MSG_ERROR("The HDF5 libraries are needed to build the system.")]) ################# # MODULE: PETSc # ################# # The AC_SEARCH_LIBS other-libraries list is not particularly useful. # Autoconf determines if the other-libraries are necessary however in # the cases where they are indeed necessary they are not actually # added to the library list. # These are the dependencies. Random functions are selected from # these libraries from the list of otherwise undefined references at # link time. AC_SEARCH_LIBS([PetscInitialize],[petsc]) AC_SEARCH_LIBS([VecNorm],[petscvec]) # MatCreateSeqAIJ is acutally used in the code for this project. AC_SEARCH_LIBS([MatCreateSeqAIJ],[petscmat],[], [AC_MSG_ERROR("The Portable Extensible Tookit for Scientific Computation PETSc is needed to build the system.")]) AC_OUTPUT