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2010-01-25Added MatAssembly commands to write the cached data to the matrix structure.Don Pellegrino1-0/+3
2010-01-25Test of writing a sparse matrix to disk.Don Pellegrino1-0/+10
2010-01-25Added the initialization of a sparse matrix to be used to track theDon Pellegrino6-24/+127
pairwise BLAST scores for all influenza sequences. Modified the Autoconf input so that libraries are automatically added to LIBS rather than manually in Makefile.am. Added the use of the PETSc API which is used for the sparse matrix implementation.
2010-01-21Removed unused status variable from check_h5_error function.Donald Pellegrino7-31/+35
2010-01-19Ran GNU indent on the code and headers.Don Pellegrino10-93/+99
2010-01-19Cleaned up some of the documentation.Don Pellegrino1-4/+3
2010-01-19Program now fully uses an existing file. The load functions detectDon Pellegrino7-86/+201
their existing target tables and purge them if they exist or create them if they don't. The assign function will reuse existing type values by gi and write a new table that is aligned by gi with influenza.faa.
2010-01-19Updated to compile. Code fills a new table of type values however it does no...Don Pellegrino1-106/+163
2010-01-18Organzied the functions into assign, error, load and model subdirectories. C...Don Pellegrino22-71/+181

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