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2010-01-19Removed debugging flag. GNU Autotools is setting default debuggingDon Pellegrino1-1/+1
(-g) and optimization flags (-O2) automatically. To override these exporting CFLAGS at ./configure time is necessary.
2010-01-18Organzied the functions into assign, error, load and model subdirectories. C...Don Pellegrino22-71/+181
2010-01-18Implemented updator to calculate and assign protein type values toDon Pellegrino7-96/+188
records which do not have them. This is a re-entrant process that only updates missing records and skips quickly through existing records. In addition premature termination loses at most 999 records of work since every thousand records are written back to the file and flushed to disk. Still to do is to write and flush the last set of records in the final bin under 1000. Also refactored the sequence_data structure so that it can be shared between HDF5 reading and writing operations.
2010-01-18Moved updating the HDF5 file to a separate driver.Don Pellegrino3-8/+43
2010-01-17Added error checking routines. Added implementation ofDon Pellegrino12-13/+211
assign_protein_type tested against a single hard-coded sequence input. The next step is to iterate over all records in the HDF5 collection that don't have a type assigned and to assign a type value.
2010-01-16Added the assign_protein_type function declaration without implementation.Don Pellegrino1-0/+2
2010-01-16Added function declaration for load_influenza_faa.Don Pellegrino4-3/+31
2010-01-15Code compiles and creates an HDF5 file containing a table with oneDon Pellegrino5-0/+208
record of influenza_aa.dat populated.

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