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-rw-r--r--.gitignore5
-rw-r--r--src/Makefile.am10
-rw-r--r--src/assign_protein_type.c135
-rw-r--r--src/load_influenza_faa.c67
-rw-r--r--src/sequence_data.h16
-rw-r--r--src/sequence_data_init.c37
-rw-r--r--src/sequence_data_init.h14
7 files changed, 188 insertions, 96 deletions
diff --git a/src/sequence_data.h b/src/sequence_data.h
new file mode 100644
index 0000000..fb4ff78
--- a/dev/null
+++ b/src/sequence_data.h
@@ -0,0 +1,16 @@
1#ifndef SEQUENCE_DATA_H
2#define SEQUENCE_DATA_H
3
4#define SEQUENCE_DATA_FIELD_NUM 4
5
6#define SEQUENCE_DATA_FIELD_NAMES { "GI", "GB", "Description", "Protein Type" }
7
8typedef struct
9{
10 int gi;
11 char gb[9];
12 char description[196];
13 char protein_type[7];
14} sequence_data;
15
16#endif // SEQUENCE_DATA_H

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