| -rw-r--r-- | src/aggregator.c | 10 | ||||
| -rw-r--r-- | src/assign/assign_protein_type.c | 24 | ||||
| -rw-r--r-- | src/error/check_h5_error.c | 2 | ||||
| -rw-r--r-- | src/error/check_h5_error.h | 2 | ||||
| -rw-r--r-- | src/load/load_influenza_aa_dat.c | 12 | ||||
| -rw-r--r-- | src/load/load_influenza_faa.c | 12 | ||||
| -rw-r--r-- | src/updator.c | 4 |
7 files changed, 35 insertions, 31 deletions
diff --git a/src/load/load_influenza_faa.c b/src/load/load_influenza_faa.c index 80eb3ae..0026d11 100644 --- a/src/load/load_influenza_faa.c +++ b/src/load/load_influenza_faa.c | |||
| @@ -1,3 +1,4 @@ | |||
| 1 | #define _GNU_SOURCE | ||
| 1 | #include "error/check_error.h" | 2 | #include "error/check_error.h" |
| 2 | #include "error/check_h5_error.h" | 3 | #include "error/check_h5_error.h" |
| 3 | #include "load_influenza_faa.h" | 4 | #include "load_influenza_faa.h" |
| @@ -6,6 +7,7 @@ | |||
| 6 | #include <hdf5_hl.h> | 7 | #include <hdf5_hl.h> |
| 7 | #include <string.h> | 8 | #include <string.h> |
| 8 | #include <stdlib.h> | 9 | #include <stdlib.h> |
| 10 | #include <stdio.h> | ||
| 9 | 11 | ||
| 10 | void | 12 | void |
| 11 | load_influenza_faa (hid_t file_id, const char *file_name) | 13 | load_influenza_faa (hid_t file_id, const char *file_name) |
| @@ -72,18 +74,18 @@ load_influenza_faa (hid_t file_id, const char *file_name) | |||
| 72 | H5TBget_table_info (file_id, "influenza.faa", &nfields, | 74 | H5TBget_table_info (file_id, "influenza.faa", &nfields, |
| 73 | &nrecords); | 75 | &nrecords); |
| 74 | if (status < 0) | 76 | if (status < 0) |
| 75 | check_h5_error (status, __FILE__, __LINE__); | 77 | check_h5_error (__FILE__, __LINE__); |
| 76 | 78 | ||
| 77 | status = | 79 | status = |
| 78 | H5TBdelete_record (file_id, "influenza.faa", 0, nrecords); | 80 | H5TBdelete_record (file_id, "influenza.faa", 0, nrecords); |
| 79 | if (status < 0) | 81 | if (status < 0) |
| 80 | check_h5_error (status, __FILE__, __LINE__); | 82 | check_h5_error (__FILE__, __LINE__); |
| 81 | 83 | ||
| 82 | status = | 84 | status = |
| 83 | H5TBappend_records (file_id, "influenza.faa", 1, dst_size, | 85 | H5TBappend_records (file_id, "influenza.faa", 1, dst_size, |
| 84 | dst_offset, dst_sizes, &p_data); | 86 | dst_offset, dst_sizes, &p_data); |
| 85 | if (status < 0) | 87 | if (status < 0) |
| 86 | check_h5_error (status, __FILE__, __LINE__); | 88 | check_h5_error (__FILE__, __LINE__); |
| 87 | } | 89 | } |
| 88 | 90 | ||
| 89 | /* | 91 | /* |
| @@ -101,7 +103,7 @@ load_influenza_faa (hid_t file_id, const char *file_name) | |||
| 101 | compress, | 103 | compress, |
| 102 | &p_data); | 104 | &p_data); |
| 103 | if (status < 0) | 105 | if (status < 0) |
| 104 | check_h5_error (status, __FILE__, __LINE__); | 106 | check_h5_error (__FILE__, __LINE__); |
| 105 | } | 107 | } |
| 106 | } | 108 | } |
| 107 | 109 | ||
| @@ -111,7 +113,7 @@ load_influenza_faa (hid_t file_id, const char *file_name) | |||
| 111 | H5TBappend_records (file_id, "influenza.faa", 1, dst_size, | 113 | H5TBappend_records (file_id, "influenza.faa", 1, dst_size, |
| 112 | dst_offset, dst_sizes, &p_data); | 114 | dst_offset, dst_sizes, &p_data); |
| 113 | if (status < 0) | 115 | if (status < 0) |
| 114 | check_h5_error (status, __FILE__, __LINE__); | 116 | check_h5_error (__FILE__, __LINE__); |
| 115 | } | 117 | } |
| 116 | 118 | ||
| 117 | if (running) | 119 | if (running) |
