summaryrefslogtreecommitdiffstats
Unidiff
-rw-r--r--src/aggregator.c2
-rw-r--r--src/assign_protein_type.c7
-rw-r--r--src/assign_protein_type.h3
-rw-r--r--src/check_error.c2
-rw-r--r--src/check_error.h3
-rw-r--r--src/check_h5_error.c2
-rw-r--r--src/check_h5_error.h2
-rw-r--r--src/check_ncbi_error.c3
-rw-r--r--src/check_ncbi_error.h2
-rw-r--r--src/load_influenza_aa_dat.c259
-rw-r--r--src/load_influenza_aa_dat.h3
-rw-r--r--src/load_influenza_faa.c2
-rw-r--r--src/load_influenza_faa.h3
13 files changed, 145 insertions, 148 deletions
diff --git a/src/assign_protein_type.c b/src/assign_protein_type.c
index 643ea3f..54db84e 100644
--- a/src/assign_protein_type.c
+++ b/src/assign_protein_type.c
@@ -48,8 +48,8 @@ assign_protein_type (hid_t file_id)
48 * Read the sequence from the database by GI.48 * Read the sequence from the database by GI.
49 */49 */
50 Int4 sequence_number = readdb_gi2seq (seqdb, 453644, NULL);50 Int4 sequence_number = readdb_gi2seq (seqdb, 453644, NULL);
51 BioseqPtr bsp = readdb_get_bioseq(seqdb, sequence_number);51 BioseqPtr bsp = readdb_get_bioseq (seqdb, sequence_number);
52 52
53 SeqAlignPtr seqalign = BioseqBlastEngine (bsp,53 SeqAlignPtr seqalign = BioseqBlastEngine (bsp,
54 "blastp",54 "blastp",
55 REFDB,55 REFDB,
@@ -66,8 +66,7 @@ assign_protein_type (hid_t file_id)
66 Char target_id_buf[BUFFER_LEN + 1];66 Char target_id_buf[BUFFER_LEN + 1];
67 SeqIdPtr target_id = SeqAlignId (seqalign, 1);67 SeqIdPtr target_id = SeqAlignId (seqalign, 1);
68 SeqIdWrite (target_id, target_id_buf, PRINTID_FASTA_SHORT, BUFFER_LEN);68 SeqIdWrite (target_id, target_id_buf, PRINTID_FASTA_SHORT, BUFFER_LEN);
69 printf ("%s\n",69 printf ("%s\n", target_id_buf);
70 target_id_buf);
71 }70 }
7271
73 // Clean up memory for the next ieration.72 // Clean up memory for the next ieration.

Valid XHTML 1.0 Strict

Copyright © 2009 Don Pellegrino All Rights Reserved.