| -rw-r--r-- | analysis/year.R | 20 | ||||
| -rw-r--r-- | src/Makefile.am | 39 | ||||
| -rw-r--r-- | src/aggregator.c | 6 | ||||
| -rw-r--r-- | src/assign/assign_protein_type.c (renamed from src/assign_protein_type.c) | 87 | ||||
| -rw-r--r-- | src/assign/assign_protein_type.h (renamed from src/assign_protein_type.h) | 0 | ||||
| -rw-r--r-- | src/error/check_error.c (renamed from src/check_error.c) | 0 | ||||
| -rw-r--r-- | src/error/check_error.h (renamed from src/check_error.h) | 0 | ||||
| -rw-r--r-- | src/error/check_h5_error.c (renamed from src/check_h5_error.c) | 0 | ||||
| -rw-r--r-- | src/error/check_h5_error.h (renamed from src/check_h5_error.h) | 0 | ||||
| -rw-r--r-- | src/error/check_ncbi_error.c (renamed from src/check_ncbi_error.c) | 0 | ||||
| -rw-r--r-- | src/error/check_ncbi_error.h (renamed from src/check_ncbi_error.h) | 0 | ||||
| -rw-r--r-- | src/load/load_influenza_aa_dat.c (renamed from src/load_influenza_aa_dat.c) | 4 | ||||
| -rw-r--r-- | src/load/load_influenza_aa_dat.h (renamed from src/load_influenza_aa_dat.h) | 0 | ||||
| -rw-r--r-- | src/load/load_influenza_faa.c (renamed from src/load_influenza_faa.c) | 10 | ||||
| -rw-r--r-- | src/load/load_influenza_faa.h (renamed from src/load_influenza_faa.h) | 0 | ||||
| -rw-r--r-- | src/model/gi_type_data.h | 21 | ||||
| -rw-r--r-- | src/model/gi_type_data_init.c | 36 | ||||
| -rw-r--r-- | src/model/gi_type_data_init.h | 14 | ||||
| -rw-r--r-- | src/model/sequence_data.h (renamed from src/sequence_data.h) | 5 | ||||
| -rw-r--r-- | src/model/sequence_data_init.c (renamed from src/sequence_data_init.c) | 6 | ||||
| -rw-r--r-- | src/model/sequence_data_init.h (renamed from src/sequence_data_init.h) | 0 | ||||
| -rw-r--r-- | src/updator.c | 4 |
22 files changed, 181 insertions, 71 deletions
diff --git a/src/Makefile.am b/src/Makefile.am index 6dd8e16..06a6f5c 100644 --- a/src/Makefile.am +++ b/src/Makefile.am @@ -2,28 +2,31 @@ bin_PROGRAMS = aggregator updator aggregator_SOURCES = \ aggregator.c \ - check_error.c \ - check_h5_error.c \ - load_influenza_aa_dat.c \ - load_influenza_faa.c \ - sequence_data_init.c + error/check_error.c \ + error/check_h5_error.c \ + load/load_influenza_aa_dat.c \ + load/load_influenza_faa.c \ + model/sequence_data_init.c updator_SOURCES = \ updator.c \ - check_error.c \ - check_h5_error.c \ - check_ncbi_error.c \ - assign_protein_type.c \ - sequence_data_init.c + assign/assign_protein_type.c \ + error/check_error.c \ + error/check_h5_error.c \ + error/check_ncbi_error.c \ + model/gi_type_data_init.c \ + model/sequence_data_init.c noinst_HEADERS = \ - assign_protein_type.h \ - check_error.h \ - check_h5_error.h \ - check_ncbi_error.h \ - load_influenza_aa_dat.h \ - load_influenza_faa.h \ - sequence_data.h \ - sequence_data_init.h + assign/assign_protein_type.h \ + error/check_error.h \ + error/check_h5_error.h \ + error/check_ncbi_error.h \ + load/load_influenza_aa_dat.h \ + load/load_influenza_faa.h \ + model/gi_type_data.h \ + model/gi_type_data_init.h \ + model/sequence_data.h \ + model/sequence_data_init.h AM_CFLAGS = -Wall -std=gnu99 -ggdb |
