5 files changed, 65 insertions, 46 deletions

diff --git a/doc/env-cobalt.sh b/doc/env-cobalt.sh
new file mode 100644
index 0000000..5a7a6c3
--- a/dev/null
+++ b/doc/env-cobalt.sh
@@ -0,0 +1,56 @@
+#!/bin/bash
+
+# This script sets environment variables for building and running the
+# project on NCSA Cobalt.  Note that this script should be executed
+# with source env-cobalt.sh rather than ./env-cobalt.sh so that the
+# exports affect the current shell.
+
+# Building on NCSA Cobalt.
+
+# .soft
+#
+# @remove +hdf4
+# @remove +hdf4-4.2.1
+# @remove +hdf5
+# @remove +hdf5-1.6.5
+#
+# @remove +intel-compilers
+# @remove +intel-compilers10.0
+# @remove +intel-compilers10.1
+# @remove +intel-c-10.1.017-f-10.1.017
+# @remove +intel-c-11.1.064-f-11.1.064
+#
+# ...defaults...
+#
+# +phdf5-1.8.4
+
+# Configure
+
+echo "Setting CPPFLAGS."
+
+export CPPFLAGS="\
+-I$HDF5_HOME/include \
+-I$NCBI_DIR/include \
+-I$PETSC_DIR/$PETSC_ARCH/include"
+
+echo CPPFLAGS=$CPPFLAGS
+
+echo "Setting LDFLAGS."
+
+export LDFLAGS="\
+-L$HDF5_HOME/lib \
+-L/usr/apps/hdf/szip/lib \
+-L/usr/local/intel/10.1.017/lib \
+-L$NCBI_DIR/lib \
+-L$PETSC_DIR/$PETSC_ARCH/lib"
+
+echo LDFLAGS=$LDFLAGS
+
+echo "Setting LD_LIBRARY_PATH."
+
+export LD_LIBRARY_PATH=\
+$LD_LIBRARY_PATH:\
+/usr/apps/hdf/szip/lib:\
+$PETSC_DIR/$PETSC_ARCH/lib
+
+echo LD_LIBRARY_PATH=$LD_LIBRARY_PATH