| -rw-r--r-- | README | 30 | ||||
| -rw-r--r-- | doc/Data Deployments.dia | bin | 3566 -> 4057 bytes | |||
| -rw-r--r-- | src/aggregator.c | 2 | ||||
| -rw-r--r-- | src/load_influenza_aa_dat.c | 154 |
4 files changed, 145 insertions, 41 deletions
@@ -32,4 +32,32 @@ The "doc/Data Deployments.dia" diagram shows the source systems that expose the various records as well as the transform routines that are used for aggregation of the data on the local system. - LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia +BUILDING + +An autogen.sh script is provided to initialize the project directory +with the necessary GNU Autotools configuration. + +When building on a Debian system the mpi.h file is in a subdirectory +of /usr/include and therefore not found within the default include +path. To account for this run the following before running +./configure. + + $ export CPPFLAGS=-I/usr/include/mpi + +TEST CASES + +The "load_influenza_aa_dat" function loads a single tab delimited text +file into a table structure in the HDF5 file. The HDFView GUI can be +used to open the loaded table and then export it back out as a text +file. The text file can then be compared with the original input to +verify that the load was completed without error. + + $ diff --report-identical-files \ + /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat \ + Protein\ Sequences.txt + + Files /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat and + Protein Sequences.txt are identical + + LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia mpi + LocalWords: autogen Autotools CPPFLAGS aa dat HDFView GUI diff txt |
