Unidiff4 files changed, 145 insertions, 41 deletions
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diff --git a/README b/README index 9caedb8..197d289 100644 --- a/ README+++ b/ README |
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@@ -32,4 +32,32 @@ The "doc/Data Deployments.dia" diagram shows the source systems that |
32 | expose the various records as well as the transform routines that are | 32 | expose the various records as well as the transform routines that are |
33 | used for aggregation of the data on the local system. | 33 | used for aggregation of the data on the local system. |
34 | | 34 | |
35 | LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia | 35 | BUILDING |
| | 36 | |
| | 37 | An autogen.sh script is provided to initialize the project directory |
| | 38 | with the necessary GNU Autotools configuration. |
| | 39 | |
| | 40 | When building on a Debian system the mpi.h file is in a subdirectory |
| | 41 | of /usr/include and therefore not found within the default include |
| | 42 | path. To account for this run the following before running |
| | 43 | ./configure. |
| | 44 | |
| | 45 | $ export CPPFLAGS=-I/usr/include/mpi |
| | 46 | |
| | 47 | TEST CASES |
| | 48 | |
| | 49 | The "load_influenza_aa_dat" function loads a single tab delimited text |
| | 50 | file into a table structure in the HDF5 file. The HDFView GUI can be |
| | 51 | used to open the loaded table and then export it back out as a text |
| | 52 | file. The text file can then be compared with the original input to |
| | 53 | verify that the load was completed without error. |
| | 54 | |
| | 55 | $ diff --report-identical-files \ |
| | 56 | /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat \ |
| | 57 | Protein\ Sequences.txt |
| | 58 | |
| | 59 | Files /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat and |
| | 60 | Protein Sequences.txt are identical |
| | 61 | |
| | 62 | LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia mpi |
| | 63 | LocalWords: autogen Autotools CPPFLAGS aa dat HDFView GUI diff txt |
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