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Unidiff
-rw-r--r--README30
-rw-r--r--doc/Data Deployments.diabin3566 -> 4057 bytes
-rw-r--r--src/aggregator.c2
-rw-r--r--src/load_influenza_aa_dat.c154
4 files changed, 145 insertions, 41 deletions
diff --git a/README b/README
index 9caedb8..197d289 100644
--- a/README
+++ b/README
@@ -32,4 +32,32 @@ The "doc/Data Deployments.dia" diagram shows the source systems that
32expose the various records as well as the transform routines that are32expose the various records as well as the transform routines that are
33used for aggregation of the data on the local system.33used for aggregation of the data on the local system.
3434
35 LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia35BUILDING
36
37An autogen.sh script is provided to initialize the project directory
38with the necessary GNU Autotools configuration.
39
40When building on a Debian system the mpi.h file is in a subdirectory
41of /usr/include and therefore not found within the default include
42path. To account for this run the following before running
43./configure.
44
45 $ export CPPFLAGS=-I/usr/include/mpi
46
47TEST CASES
48
49The "load_influenza_aa_dat" function loads a single tab delimited text
50file into a table structure in the HDF5 file. The HDFView GUI can be
51used to open the loaded table and then export it back out as a text
52file. The text file can then be compared with the original input to
53verify that the load was completed without error.
54
55 $ diff --report-identical-files \
56 /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat \
57 Protein\ Sequences.txt
58
59 Files /home/don/exp004/genomes/INFLUENZA/influenza_aa.dat and
60 Protein Sequences.txt are identical
61
62 LocalWords: NCBI parallelization HDF SQL Pellegrino phylogenetic DBMS dia mpi
63 LocalWords: autogen Autotools CPPFLAGS aa dat HDFView GUI diff txt

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