| -rw-r--r-- | src/assign/assign_protein_type.c | 7 |
1 files changed, 3 insertions, 4 deletions
diff --git a/src/assign/assign_protein_type.c b/src/assign/assign_protein_type.c index 3947800..9a0717b 100644 --- a/src/assign/assign_protein_type.c +++ b/src/assign/assign_protein_type.c @@ -42,6 +42,7 @@ assign_protein_type (hid_t file_id) * Make BLAST messages reportable. */ ErrSetMessageLevel (SEV_WARNING); + ValNodePtr error_returns = NULL; /* * Open the BLAST sequence database. @@ -59,8 +60,6 @@ assign_protein_type (hid_t file_id) options->window_size = 0; options->multiple_hits_only = false; - ValNodePtr error_returns = NULL; - /* * Read the data from HDF5 influenza.faa. */ @@ -240,7 +239,7 @@ assign_protein_type (hid_t file_id) /* * A hit was found. Record the first hit as the protein type. - * Skip the first 6 characters and eat the "lcl|x_". + * Skip the first 4 characters and eat the "lcl|". */ else if (seqalign != NULL) { @@ -253,7 +252,7 @@ assign_protein_type (hid_t file_id) new_buf[i].type[0] = target_id_buf[4]; new_buf[i].type[1] = '\0'; - // Protein Type + // Protein Type (Skip the underscore in the string). strncpy (new_buf[i].protein, &target_id_buf[6], sizeof (new_buf[i].protein)); } |
