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-rw-r--r--src/Makefile.am2
-rw-r--r--src/controller/callbacks/reshape.c2
-rw-r--r--src/db/dbconnect.sqc12
-rw-r--r--src/model/data/base.sqc2
-rw-r--r--src/model/state/state.h3
-rw-r--r--src/util/check_error.c6
-rw-r--r--src/util/check_error_db.c13
-rw-r--r--src/util/check_error_db.h9
-rw-r--r--test/distance_sanity_check/gi_227977170_78032581.pngbin0 -> 51161 bytes
-rw-r--r--test/entropy/Align2Ref.m24
-rw-r--r--test/entropy/CalculateEntropy.m15
-rw-r--r--test/entropy/CalculateProteinEntropy.m25
-rw-r--r--test/entropy/FastNWalign2.c94
-rw-r--r--test/entropy/GenomeAlignments.m31
-rw-r--r--test/entropy/GenomePairwiseDist.m98
-rw-r--r--test/entropy/RefineAlignments.m276
-rw-r--r--test/entropy/don_anal.m40
-rw-r--r--test/entropy/nwalign_mod.m637
18 files changed, 1280 insertions, 9 deletions
diff --git a/src/model/state/state.h b/src/model/state/state.h
index 6e4f62e..f432017 100644
--- a/src/model/state/state.h
+++ b/src/model/state/state.h
@@ -8,6 +8,7 @@
8/*8/*
9 * Buffer object identifiers.9 * Buffer object identifiers.
10 */10 */
11#define NUM_BUFFERS 2
11#define BASE_VERTICES 012#define BASE_VERTICES 0
12#define BASE_COLORS 113#define BASE_COLORS 1
1314
@@ -80,7 +81,7 @@ typedef struct
80 /*81 /*
81 * Buffer objects.82 * Buffer objects.
82 */83 */
83 unsigned int buffers[1];84 unsigned int buffers[NUM_BUFFERS];
8485
85 /*86 /*
86 * GI Identifiers indexed by row. Storage is [rows][20].87 * GI Identifiers indexed by row. Storage is [rows][20].

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