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-rw-r--r--AUTHORS1
-rw-r--r--Makefile.am2
-rw-r--r--README24
-rw-r--r--ax/acx_pthread.m4242
-rw-r--r--ax/ax_check_gl.m495
-rw-r--r--ax/ax_check_glu.m471
-rw-r--r--ax/ax_check_glut.m478
-rw-r--r--ax/ax_lang_compiler_ms.m423
-rw-r--r--configure.ac24
-rw-r--r--src/Makefile.am28
-rw-r--r--src/controller/exp004display.c16
-rw-r--r--src/controller/exp004display.h6
-rw-r--r--src/controller/exp004mouse.c90
-rw-r--r--src/controller/exp004mouse.h6
-rw-r--r--src/controller/exp004processhits.c54
-rw-r--r--src/controller/exp004processhits.h8
-rw-r--r--src/controller/exp004reshape.c55
-rw-r--r--src/controller/exp004reshape.h6
-rw-r--r--src/exp004viz.c15
-rw-r--r--src/model/exp004base.c107
-rw-r--r--src/model/exp004base.h9
-rw-r--r--src/model/exp004state.h101
-rw-r--r--src/util/check_error.c17
-rw-r--r--src/util/check_error.h9
-rw-r--r--src/view/exp004geometry.c32
-rw-r--r--src/view/exp004geometry.h8
-rw-r--r--src/view/exp004state0.h8
-rw-r--r--src/view/exp004view.c44
-rw-r--r--src/view/exp004view.h6
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diff --git a/README b/README
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+Visualization system to explore the data from exp004.
+
+======================
+CLUSTER.CIS.DREXEL.EDU
+======================
+
+Building on cluster.cis.drexel.edu requires explicitly adding a number
+of NCBI libraries and using the local install of the NCBI toolkit.
+Before running ./configure set the following:
+
+ export LDFLAGS=-L/usr/local/ncbi/lib
+ export CPPFLAGS=-I/usr/local/ncbi/include
+
+Before running a program that makes use of BLAST create a ~/.ncbirc
+file with the following contents. This instruction is based on a
+message at
+http://osdir.com/ml/science.biology.informatics.bulletin/2006-02/msg00061.html
+
+ [NCBI]
+ data=/usr/local/ncbi/data
+
+ [BLAST]
+ BLASTMAT=/usr/local/ncbi/data
+

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Copyright © 2009 Don Pellegrino All Rights Reserved.