1 files changed, 59 insertions, 0 deletions
diff --git a/test/explore1.txt b/test/explore1.txt
new file mode 100644
index 0000000..500debe
--- a/dev/null
+++ b/test/explore1.txt
@@ -0,0 +1,59 @@
+By analyzing the map we can see the that 2004 Avian flu is very
+similar to the 1957 pandemic within one of the clusters.  Seven
+proteins from the 1957 pandemic surround a single protein from the
+2004 avian flu.  Although the strains of H2N2 and H9N2 are different
+this particular and specific similarity is identifiable at a lower
+level of detail.  Such a relationship might be difficult to discover
+by performing only organism to organism comparisons.
+Selection
+---------
+db2 => select * from vis_selection;
+GI                                                
+--------------------------------------------------
+187937439                                         
+188504364                                         
+189230513                                         
+194352176                                         
+194352214                                         
+194352233                                         
+194352252                                         
+208342867                                         
+  8 record(s) selected.
+Summary
+-------
+> summary (d);
+         GI      GBSEQ_LOCUS GBSEQ_ACCESSION_VERSION   GBSEQ_UPDATE_DATE
+ 187937439:1   ACD37779:1    ACD37779.1:1            01-JUN-2008:1      
+ 188504364:1   ACD56299:1    ACD56299.1:1            02-OCT-2008:1      
+ 189230513:1   ACD85239:1    ACD85239.1:1            16-MAY-2008:1      
+ 194352176:1   ACF54485:1    ACF54485.1:1            19-JAN-2009:1      
+ 194352214:1   ACF54507:1    ACF54507.1:1            21-JUL-2008:4      
+ 194352233:1   ACF54518:1    ACF54518.1:1                               
+ (Other)  :2   (Other) :2    (Other)   :2                               
+   GBSEQ_CREATE_DATE                                               ORGANISM
+ 01-JUN-2008:1       Influenza A virus (A/Ann Arbor/23/1957(H2N2))     :1  
+ 02-OCT-2008:1       Influenza A virus (A/chicken/Korea/S21/2004(H9N2)):1  
+ 16-MAY-2008:1       Influenza A virus (A/Guiyang/1/1957(H2N2))        :1  
+ 19-JAN-2009:1       Influenza A virus (A/Singapore/1/1957(H2N2))      :1  
+ 21-JUL-2008:4       Influenza A virus (A/Singapore/1-MA12A/1957(H2N2)):1  
+                     Influenza A virus (A/Singapore/1-MA12B/1957(H2N2)):1  
+                     (Other)                                           :2  
+                      STRAIN  SEROTYPE    N_CITES 
+ A/Ann Arbor/23/1957     :1   H2N2:7   Min.   :2  
+ A/chicken/Korea/S21/2004:1   H9N2:1   1st Qu.:2  
+ A/Guiyang/1/1957        :1            Median :2  
+ A/Singapore/1/1957      :1            Mean   :2  
+ A/Singapore/1-MA12A/1957:1            3rd Qu.:2  
+ A/Singapore/1-MA12B/1957:1            Max.   :2  
+ (Other)                 :2                       
+Based on this finding it might be worthwhile to investigate the
+similarities bewteen the single protein from a chicken in Korea in
+2004 relative to the Singapore, Guiyang and Ann Arbor proteins from
+1957.  One interesting observation is the geographic outlier of Ann
+Arbor versus the others in Asia.

diff --git a/test/explore1.txt b/test/explore1.txt new file mode 100644 index 0000000..500debe --- a/dev/null +++ b/test/explore1.txt
@@ -0,0 +1,59 @@
	1	By analyzing the map we can see the that 2004 Avian flu is very
	2	similar to the 1957 pandemic within one of the clusters. Seven
	3	proteins from the 1957 pandemic surround a single protein from the
	4	2004 avian flu. Although the strains of H2N2 and H9N2 are different
	5	this particular and specific similarity is identifiable at a lower
	6	level of detail. Such a relationship might be difficult to discover
	7	by performing only organism to organism comparisons.
	8
	9	Selection
	10	---------
	11	db2 => select * from vis_selection;
	12
	13	GI
	14	--------------------------------------------------
	15	187937439
	16	188504364
	17	189230513
	18	194352176
	19	194352214
	20	194352233
	21	194352252
	22	208342867
	23
	24	8 record(s) selected.
	25
	26	Summary
	27	-------
	28	> summary (d);
	29	GI GBSEQ_LOCUS GBSEQ_ACCESSION_VERSION GBSEQ_UPDATE_DATE
	30	187937439:1 ACD37779:1 ACD37779.1:1 01-JUN-2008:1
	31	188504364:1 ACD56299:1 ACD56299.1:1 02-OCT-2008:1
	32	189230513:1 ACD85239:1 ACD85239.1:1 16-MAY-2008:1
	33	194352176:1 ACF54485:1 ACF54485.1:1 19-JAN-2009:1
	34	194352214:1 ACF54507:1 ACF54507.1:1 21-JUL-2008:4
	35	194352233:1 ACF54518:1 ACF54518.1:1
	36	(Other) :2 (Other) :2 (Other) :2
	37	GBSEQ_CREATE_DATE ORGANISM
	38	01-JUN-2008:1 Influenza A virus (A/Ann Arbor/23/1957(H2N2)) :1
	39	02-OCT-2008:1 Influenza A virus (A/chicken/Korea/S21/2004(H9N2)):1
	40	16-MAY-2008:1 Influenza A virus (A/Guiyang/1/1957(H2N2)) :1
	41	19-JAN-2009:1 Influenza A virus (A/Singapore/1/1957(H2N2)) :1
	42	21-JUL-2008:4 Influenza A virus (A/Singapore/1-MA12A/1957(H2N2)):1
	43	Influenza A virus (A/Singapore/1-MA12B/1957(H2N2)):1
	44	(Other) :2
	45	STRAIN SEROTYPE N_CITES
	46	A/Ann Arbor/23/1957 :1 H2N2:7 Min. :2
	47	A/chicken/Korea/S21/2004:1 H9N2:1 1st Qu.:2
	48	A/Guiyang/1/1957 :1 Median :2
	49	A/Singapore/1/1957 :1 Mean :2
	50	A/Singapore/1-MA12A/1957:1 3rd Qu.:2
	51	A/Singapore/1-MA12B/1957:1 Max. :2
	52	(Other) :2
	53
	54	Based on this finding it might be worthwhile to investigate the
	55	similarities bewteen the single protein from a chicken in Korea in
	56	2004 relative to the Singapore, Guiyang and Ann Arbor proteins from
	57	1957. One interesting observation is the geographic outlier of Ann
	58	Arbor versus the others in Asia.
	59